Program blastn Database Mangrove (all) Aegiceras corniculatum Avicennia alba Avicennia bicolor Avicennia germinans Avicennia marina Avicennia schaueriana Bruguiera cylindrica Bruguiera gymnorhiza Bruguiera sexangula Ceriops australis Ceriops decandra Ceriops tagal Conocarpus erectus Excoecaria agallocha Excoecaria cochinchinensis Heritiera littoralis Kandelia candel Laguncularia racemosa Lumnitzera littorea Lumnitzera racemosa Rhizophora mangle Sonneratia alba Sonneratia apetala Sonneratia caseolaris Sonneratia griffithii Sonneratia griffithii x alba Sonneratia ovata Sonneratia paracaseolaris
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From       To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options: